PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG023492t3
Common NameTCM_023492
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 466aa    MW: 51215.3 Da    PI: 9.3077
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG023492t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.39.3e-10179220445
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Thecc1EG023492t3 179 QKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 220
                       6889*************************9777777666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.8E-8171223No hitNo description
SMARTSM003384.6E-9176239IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415178222IPR004827Basic-leucine zipper domain
CDDcd147081.79E-22180232No hitNo description
SuperFamilySSF579596.88E-7180223No hitNo description
PfamPF001707.8E-7180220IPR004827Basic-leucine zipper domain
PROSITE patternPS000360183198IPR004827Basic-leucine zipper domain
PfamPF141441.2E-31262337IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MGSRTVNIGI GNDKKAVTAM PSYVPSVPTS NPSSTEANTI RSSRIPDLGT LEQSLGFRIE  60
DAVDLTRNPL FNQIKSSTQA IADAQFGAIN KTLASADNNL SAAIVGSQTL TLKKDTPPNL  120
VSISAGRENW GDSNMADASP RTDISTDDTD EKNQRFERGQ TNAIVASDSS DRSKDKTDQK  180
TLRRLAQNRE AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQSHSM  240
SGNGALAFDV EYARWLEEHN RQINELRAAV NSHAGDTELR TIVDNVTAHF DDIFRLKGIA  300
AKADVFHILS GMWKTPAERC FLWIGGFRSS ELLKLLANQL EPLTEQQFMG FHNLQQSSQQ  360
AEDALSQGME ALQQSLAETL ANGSPGPSGS SGNVANYMGQ MAMAMGKLGT LEGFVRQADN  420
LRQQTLQQMH RILTTRQSAR ALLAINDYFS RLRALSSLWL ARPRE*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00349DAPTransfer from AT3G12250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007028143.10.0TGACG motif-binding factor 6 isoform 1
RefseqXP_007028144.10.0TGACG motif-binding factor 6 isoform 1
RefseqXP_007028145.10.0TGACG motif-binding factor 6 isoform 1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A061EV200.0A0A061EV20_THECC; TGACG motif-binding factor 6 isoform 1
STRINGPOPTR_0006s03720.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-143TGACG motif-binding factor 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]